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Creators/Authors contains: "Roy, Satyaki"

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  1. Arunachalam, Viswanathan (Ed.)
    During the COVID-19 pandemic, the prevalence of asymptomatic cases challenged the reliability of epidemiological statistics in policymaking. To address this, we introducedcontagion potential(CP) as a continuous metric derived from sociodemographic and epidemiological data to quantify the infection risk posed by the asymptomatic within a region. However, CP estimation is hindered by incomplete or biased incidence data, where underreporting and testing constraints make direct estimation infeasible. To overcome this limitation, we employ a hypothesis-testing approach to infer CP from sampled data, allowing for robust estimation despite missing information. Even within the sample collected from spatial contact data, individuals possess partial knowledge of their neighborhoods, as their awareness is restricted to interactions captured by available tracking data. We introduce an adjustment factor that calibrates the sample CPs so that the sample is a reasonable estimate of the population CP. Further complicating estimation, biases in epidemiological and mobility data arise from heterogeneous reporting rates and sampling inconsistencies, which we address throughinverse probability weightingto enhance reliability. Using a spatial model for infection spread through social mixing and an optimization framework based on the SIRS epidemic model, we analyze real infection datasets from Italy, Germany, and Austria. Our findings demonstrate that statistical methods can achieve high-confidence CP estimates while accounting for variations in sample size, confidence level, mobility models, and viral strains. By assessing the effects of bias, social mixing, and sampling frequency, we propose statistical corrections to improve CP prediction accuracy. Finally, we discuss how reliable CP estimates can inform outbreak mitigation strategies despite the inherent uncertainties in epidemiological data. 
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    Free, publicly-accessible full text available August 12, 2026
  2. Free, publicly-accessible full text available December 8, 2025
  3. Wireless Body Area Networks (WBANs) are pivotal in health care and wearable technologies, enabling seamless communication between miniature sensors and devices on or within the human body. These biosensors capture critical physiological parameters, ranging from body temperature and blood oxygen levels to real-time electrocardiogram readings. However, WBANs face significant challenges during and after deployment, including energy conservation, security, reliability, and failure vulnerability. Sensor nodes, which are often battery-operated, expend considerable energy during sensing and transmission due to inherent spatiotemporal patterns in biomedical data streams. This paper provides a comprehensive survey of data-driven approaches that address these challenges, focusing on device placement and routing, sampling rate calibration, and the application of machine learning (ML) and statistical learning techniques to enhance network performance. Additionally, we validate three existing models (statistical, ML, and coding-based models) using two real datasets, namely the MIMIC clinical database and biomarkers collected from six subjects with a prototype biosensing device developed by our team. Our findings offer insights into strategies for optimizing energy efficiency while ensuring security and reliability in WBANs. We conclude by outlining future directions to leverage approaches to meet the evolving demands of healthcare applications. 
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  4. Free, publicly-accessible full text available January 1, 2026
  5. The advent of the edge computing network paradigm places the computational and storage resources away from the data centers and closer to the edge of the network largely comprising the heterogeneous IoT devices collecting huge volumes of data. This paradigm has led to considerable improvement in network latency and bandwidth usage over the traditional cloud-centric paradigm. However, the next generation networks continue to be stymied by their inability to achieve adaptive, energy-efficient, timely data transfer in a dynamic and failure-prone environment—the very optimization challenges that are dealt with by biological networks as a consequence of millions of years of evolution. The transcriptional regulatory network (TRN) is a biological network whose innate topological robustness is a function of its underlying graph topology. In this article, we survey these properties of TRN and the metrics derived therefrom that lend themselves to the design of smart networking protocols and architectures. We then review a body of literature on bio-inspired networking solutions that leverage the stated properties of TRN. Finally, we present a vision for specific aspects of TRNs that may inspire future research directions in the fields of large-scale social and communication networks. 
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  6. Cell signaling and gene transcription occur at faster time scales compared to cellular death, division, and evolution. Bridging these multiscale events in a model is computationally challenging. We introduce a framework for the systematic development of multiscale cell population models. Using message passing interface (MPI) parallelism, the framework creates a population model from a single-cell biochemical network model. It launches parallel simulations on a single-cell model and treats each stand-alone parallel process as a cell object. MPI mediates cell-to-cell and cell-to-environment communications in a server-client fashion. In the framework, model-specific higher level rules link the intracellular molecular events to cellular functions, such as death, division, or phenotype change. Cell death is implemented by terminating a parallel process, while cell division is carried out by creating a new process (daughter cell) from an existing one (mother cell). We first demonstrate these capabilities by creating two simple example models. In one model, we consider a relatively simple scenario where cells can evolve independently. In the other model, we consider interdependency among the cells, where cellular communication determines their collective behavior and evolution under a temporally evolving growth condition. We then demonstrate the framework’s capability by simulating a full-scale model of bacterial quorum sensing, where the dynamics of a population of bacterial cells is dictated by the intercellular communications in a time-evolving growth environment. 
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